Detailed information of SNP:
|
SNP ID:
sf1124409648(Gbrowse)
Chromosome: chr11 Position: 24409648 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 83.09% | 16.91% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 497 | 64.99% | 35.01% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124409648 | C->T | LOC_Os11g41470(LOC_Os11g41470.1) | INTRON |