Detailed information of SNP:
|
SNP ID:
sf1124424319(Gbrowse)
Chromosome: chr11 Position: 24424319 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 91.93% | 8.07% |
| All Indica | 793 | 99.50% | 0.50% |
| All Japonica | 452 | 81.19% | 18.81% |
| Aus | 59 | 76.27% | 23.73% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 319 | 93.73% | 6.27% |
| Tropical Japonica | 73 | 52.05% | 47.95% |
| Japonica Intermediate | 60 | 50.00% | 50.00% |
| Group VI/Aromatic | 9 | 88.89% | 11.11% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124424319 | G->A | INTERGENIC | None |