Detailed information of SNP:
|
SNP ID:
sf1124426806(Gbrowse)
Chromosome: chr11 Position: 24426806 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 72.25% | 27.75% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 497 | 29.58% | 70.42% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 10.75% | 89.25% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124426806 | T->C | LOC_Os11g41500(LOC_Os11g41500.1) | Non-Synonymous SNP |