Detailed information of SNP:
|
SNP ID:
sf1124427068(Gbrowse)
Chromosome: chr11 Position: 24427068 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 85.43% | 14.57% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 72.03% | 27.97% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 10 | 10.00% | 90.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124427068 | A->G | LOC_Os11g41500(LOC_Os11g41500.1) | Non-Synonymous SNP |