Detailed information of SNP:
|
SNP ID:
sf1124432279(Gbrowse)
Chromosome: chr11 Position: 24432279 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 87.29% | 12.71% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 496 | 72.78% | 27.22% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124432279 | G->A | INTERGENIC | None |