Detailed information of SNP:
|
SNP ID:
sf1124437225(Gbrowse)
Chromosome: chr11 Position: 24437225 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 55.90% | 44.10% |
| All Indica | 799 | 77.60% | 22.40% |
| All Japonica | 496 | 26.21% | 73.79% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124437225 | C->T | INTERGENIC | None |