Detailed information of SNP:
|
SNP ID:
sf1124444752(Gbrowse)
Chromosome: chr11 Position: 24444752 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 92.64% | 7.36% |
| All Indica | 794 | 88.04% | 11.96% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 211 | 65.40% | 34.60% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124444752 | C->T | INTERGENIC | None |