Detailed information of SNP:
|
SNP ID:
sf1124448377(Gbrowse)
Chromosome: chr11 Position: 24448377 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 97.62% | 2.38% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 468 | 92.95% | 7.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 89.29% | 10.71% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124448377 | G->T | LOC_Os11g41540(LOC_Os11g41540.1) | Synonymous |
| sf1124448377 | G->T | LOC_Os11g41540(LOC_Os11g41540.3) | Synonymous |
| sf1124448377 | G->T | LOC_Os11g41540(LOC_Os11g41540.2) | Synonymous |
| sf1124448377 | G->T | LOC_Os11g41540(LOC_Os11g41540.4) | Synonymous |