Detailed information of SNP:
|
SNP ID:
sf1124462101(Gbrowse)
Chromosome: chr11 Position: 24462101 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 79.52% | 20.48% |
| All Indica | 791 | 83.94% | 16.06% |
| All Japonica | 497 | 76.66% | 23.34% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 373 | 77.48% | 22.52% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124462101 | A->T | INTERGENIC | None |