Detailed information of SNP:
|
SNP ID:
sf1124465527(Gbrowse)
Chromosome: chr11 Position: 24465527 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1341 | 92.77% | 7.23% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 422 | 78.20% | 21.80% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 264 | 67.42% | 32.58% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124465527 | A->G | INTERGENIC | None |