Detailed information of SNP:
|
SNP ID:
sf1124467335(Gbrowse)
Chromosome: chr11 Position: 24467335 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 87.81% | 12.19% |
| All Indica | 799 | 85.61% | 14.39% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124467335 | A->G | LOC_Os11g41560(LOC_Os11g41560.1) | Synonymous |