Detailed information of SNP:
|
SNP ID:
sf1124472210(Gbrowse)
Chromosome: chr11 Position: 24472210 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 66.38% | 33.62% |
| All Indica | 788 | 56.22% | 43.78% |
| All Japonica | 496 | 85.48% | 14.52% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 371 | 57.95% | 42.05% |
| Indica II | 212 | 55.19% | 44.81% |
| Indica Intermediate | 205 | 54.15% | 45.85% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124472210 | A->G | LOC_Os11g41570(LOC_Os11g41570.1) | INTRON |