Detailed information of SNP:
|
SNP ID:
sf1124474069(Gbrowse)
Chromosome: chr11 Position: 24474069 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.42% | 36.58% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 15.90% | 84.10% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124474069 | A->T | INTERGENIC | None |