Detailed information of SNP:
|
SNP ID:
sf1124484175(Gbrowse)
Chromosome: chr11 Position: 24484175 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.49% | 10.51% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124484175 | C->T | INTERGENIC | None |