Detailed information of SNP:
|
SNP ID:
sf1124486253(Gbrowse)
Chromosome: chr11 Position: 24486253 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 73.85% | 26.15% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 497 | 38.03% | 61.97% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124486253 | C->A | LOC_Os11g41600(LOC_Os11g41600.2) | INTRON |
| sf1124486253 | C->A | LOC_Os11g41600(LOC_Os11g41600.1) | INTRON |