Detailed information of SNP:
|
SNP ID:
sf1124491343(Gbrowse)
Chromosome: chr11 Position: 24491343 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1216 | 76.81% | 23.19% |
| All Indica | 780 | 89.36% | 10.64% |
| All Japonica | 323 | 45.20% | 54.80% |
| Aus | 58 | 98.28% | 1.72% |
| Indica I | 362 | 88.67% | 11.33% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 206 | 84.47% | 15.53% |
| Temperate Japonica | 182 | 34.62% | 65.38% |
| Tropical Japonica | 83 | 57.83% | 42.17% |
| Japonica Intermediate | 58 | 60.34% | 39.66% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124491343 | A->G | INTERGENIC | None |