Detailed information of SNP:
|
SNP ID:
sf1124492545(Gbrowse)
Chromosome: chr11 Position: 24492545 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.90% | 40.10% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124492545 | C->A | INTERGENIC | None |