Detailed information of SNP:
|
SNP ID:
sf1124493770(Gbrowse)
Chromosome: chr11 Position: 24493770 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 63.57% | 36.43% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 16.10% | 83.90% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124493770 | C->T | INTERGENIC | None |