Detailed information of SNP:
|
SNP ID:
sf1124497464(Gbrowse)
Chromosome: chr11 Position: 24497464 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 93.23% | 6.77% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124497464 | T->C | INTERGENIC | None |