Detailed information of SNP:
|
SNP ID:
sf1124499303(Gbrowse)
Chromosome: chr11 Position: 24499303 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 57.04% | 42.96% |
| All Indica | 797 | 88.58% | 11.42% |
| All Japonica | 497 | 10.26% | 89.74% |
| Aus | 63 | 39.68% | 60.32% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124499303 | C->T | INTERGENIC | None |