Detailed information of SNP:
|
SNP ID:
sf1124499521(Gbrowse)
Chromosome: chr11 Position: 24499521 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 94.64% | 5.36% |
| All Indica | 798 | 93.11% | 6.89% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 79.72% | 20.28% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124499521 | G->A | INTERGENIC | None |