Detailed information of SNP:
|
SNP ID:
sf1124500580(Gbrowse)
Chromosome: chr11 Position: 24500580 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 96.25% | 3.75% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124500580 | C->T | INTERGENIC | None |