Detailed information of SNP:
|
SNP ID:
sf1124503981(Gbrowse)
Chromosome: chr11 Position: 24503981 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 95.34% | 4.66% |
| All Indica | 796 | 95.85% | 4.15% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 96.51% | 3.49% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124503981 | C->T | INTERGENIC | None |