Detailed information of SNP:
|
SNP ID:
sf1124504039(Gbrowse)
Chromosome: chr11 Position: 24504039 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.46% | 43.54% |
| All Indica | 798 | 87.97% | 12.03% |
| All Japonica | 496 | 10.69% | 89.31% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 71.23% | 28.77% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124504039 | C->T | INTERGENIC | None |