Detailed information of SNP:
|
SNP ID:
sf1124509546(Gbrowse)
Chromosome: chr11 Position: 24509546 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.48% | 39.52% |
| All Indica | 797 | 43.79% | 56.21% |
| All Japonica | 497 | 86.72% | 13.28% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 39.04% | 60.96% |
| Indica II | 212 | 54.25% | 45.75% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124509546 | C->T | INTERGENIC | None |