Detailed information of SNP:



SNP ID: sf1124509571(Gbrowse)

Chromosome: chr11

Position: 24509571
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 63.68% 36.32%
All Indica798 50.50% 49.50%
All Japonica497 84.71% 15.29%
Aus67 50.75% 49.25%
Indica I374 34.49% 65.51%
Indica II213 72.77% 27.23%
Indica Intermediate211 56.40% 43.60%
Temperate Japonica335 94.93% 5.07%
Tropical Japonica94 64.89% 35.11%
Japonica Intermediate68 61.76% 38.24%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1124509571 C->T INTERGENIC None