Detailed information of SNP:
|
SNP ID:
sf1124509571(Gbrowse)
Chromosome: chr11 Position: 24509571 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.68% | 36.32% |
| All Indica | 798 | 50.50% | 49.50% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 374 | 34.49% | 65.51% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124509571 | C->T | INTERGENIC | None |