Detailed information of SNP:
|
SNP ID:
sf1124519680(Gbrowse)
Chromosome: chr11 Position: 24519680 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 63.57% | 36.43% |
| All Indica | 799 | 50.56% | 49.44% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 34.67% | 65.33% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 56.87% | 43.13% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124519680 | A->T | INTERGENIC | None |