Detailed information of SNP:
|
SNP ID:
sf1124523298(Gbrowse)
Chromosome: chr11 Position: 24523298 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 89.43% | 10.57% |
| All Indica | 794 | 98.11% | 1.89% |
| All Japonica | 493 | 77.48% | 22.52% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 331 | 70.09% | 29.91% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124523298 | G->A | LOC_Os11g41650(LOC_Os11g41650.2) | INTRON |
| sf1124523298 | G->A | LOC_Os11g41650(LOC_Os11g41650.1) | INTRON |