Detailed information of SNP:
|
SNP ID:
sf1124523460(Gbrowse)
Chromosome: chr11 Position: 24523460 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 96.89% | 3.11% |
| All Indica | 780 | 99.49% | 0.51% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 56 | 89.29% | 10.71% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 197 | 99.49% | 0.51% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124523460 | T->C | LOC_Os11g41650(LOC_Os11g41650.2) | INTRON |
| sf1124523460 | T->C | LOC_Os11g41650(LOC_Os11g41650.1) | INTRON |