Detailed information of SNP:
|
SNP ID:
sf1124525060(Gbrowse)
Chromosome: chr11 Position: 24525060 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.84% | 10.16% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 72.58% | 27.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 63.58% | 36.42% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124525060 | C->T | LOC_Os11g41650(LOC_Os11g41650.2) | INTRON |
| sf1124525060 | C->T | LOC_Os11g41650(LOC_Os11g41650.1) | INTRON |