Detailed information of SNP:
|
SNP ID:
sf1124526777(Gbrowse)
Chromosome: chr11 Position: 24526777 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 96.69% | 3.31% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124526777 | G->A | LOC_Os11g41650(LOC_Os11g41650.2) | Synonymous |
| sf1124526777 | G->A | LOC_Os11g41650(LOC_Os11g41650.1) | UTR_3_PRIME |