Detailed information of SNP:
|
SNP ID:
sf1124531325(Gbrowse)
Chromosome: chr11 Position: 24531325 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.37% | 21.63% |
| All Indica | 799 | 67.46% | 32.54% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 63.47% | 36.53% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124531325 | G->A | INTERGENIC | None |