Detailed information of SNP:
|
SNP ID:
sf1124532538(Gbrowse)
Chromosome: chr11 Position: 24532538 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 59.39% | 40.61% |
| All Indica | 798 | 62.53% | 37.47% |
| All Japonica | 496 | 57.26% | 42.74% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 62.13% | 37.87% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 56.72% | 43.28% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124532538 | T->C | INTERGENIC | None |