Detailed information of SNP:



SNP ID: sf1124532666(Gbrowse)

Chromosome: chr11

Position: 24532666
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 88.16% 11.84%
All Indica799 99.75% 0.25%
All Japonica497 68.21% 31.79%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 62.69% 37.31%
Tropical Japonica94 82.98% 17.02%
Japonica Intermediate68 75.00% 25.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1124532666 C->T INTERGENIC None