Detailed information of SNP:
|
SNP ID:
sf1124532690(Gbrowse)
Chromosome: chr11 Position: 24532690 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 68.42% | 31.58% |
| All Indica | 783 | 51.09% | 48.91% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 371 | 44.20% | 55.80% |
| Indica II | 208 | 61.54% | 38.46% |
| Indica Intermediate | 204 | 52.94% | 47.06% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124532690 | G->A | INTERGENIC | None |