Detailed information of SNP:
|
SNP ID:
sf1124538543(Gbrowse)
Chromosome: chr11 Position: 24538543 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 54.03% | 45.97% |
| All Indica | 795 | 59.75% | 40.25% |
| All Japonica | 496 | 44.76% | 55.24% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 61.76% | 38.24% |
| Indica II | 213 | 49.30% | 50.70% |
| Indica Intermediate | 208 | 66.83% | 33.17% |
| Temperate Japonica | 335 | 38.21% | 61.79% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124538543 | A->G | INTERGENIC | None |