Detailed information of SNP:
|
SNP ID:
sf1124543505(Gbrowse)
Chromosome: chr11 Position: 24543505 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 63.60% | 36.40% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 495 | 19.39% | 80.61% |
| Aus | 64 | 76.56% | 23.44% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 9.55% | 90.45% |
| Tropical Japonica | 92 | 38.04% | 61.96% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124543505 | C->T | INTERGENIC | None |