Detailed information of SNP:
|
SNP ID:
sf1124548710(Gbrowse)
Chromosome: chr11 Position: 24548710 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 89.08% | 10.92% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 489 | 75.05% | 24.95% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 329 | 67.78% | 32.22% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124548710 | T->G | INTERGENIC | None |