Detailed information of SNP:
|
SNP ID:
sf1124556232(Gbrowse)
Chromosome: chr11 Position: 24556232 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 94.62% | 5.38% |
| All Indica | 790 | 99.75% | 0.25% |
| All Japonica | 408 | 83.33% | 16.67% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 208 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 266 | 75.56% | 24.44% |
| Tropical Japonica | 83 | 98.80% | 1.20% |
| Japonica Intermediate | 59 | 96.61% | 3.39% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124556232 | G->A | LOC_Os11g41680(LOC_Os11g41680.1) | Synonymous |