Detailed information of SNP:
|
SNP ID:
sf1124558733(Gbrowse)
Chromosome: chr11 Position: 24558733 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 61.60% | 38.40% |
| All Indica | 789 | 89.86% | 10.14% |
| All Japonica | 497 | 18.31% | 81.69% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 208 | 73.56% | 26.44% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124558733 | T->C | INTERGENIC | None |