Detailed information of SNP:



SNP ID: sf1124562615(Gbrowse)

Chromosome: chr11

Position: 24562615
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1412 89.02% 10.98%
All Indica799 97.62% 2.38%
All Japonica495 74.95% 25.05%
Aus62 88.71% 11.29%
Indica I375 96.53% 3.47%
Indica II213 98.59% 1.41%
Indica Intermediate211 98.58% 1.42%
Temperate Japonica334 68.26% 31.74%
Tropical Japonica93 96.77% 3.23%
Japonica Intermediate68 77.94% 22.06%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1124562615 T->C INTERGENIC None