Detailed information of SNP:
|
SNP ID:
sf1124562615(Gbrowse)
Chromosome: chr11 Position: 24562615 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 89.02% | 10.98% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 495 | 74.95% | 25.05% |
| Aus | 62 | 88.71% | 11.29% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 68.26% | 31.74% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124562615 | T->C | INTERGENIC | None |