Detailed information of SNP:
|
SNP ID:
sf1124565240(Gbrowse)
Chromosome: chr11 Position: 24565240 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 79.24% | 20.76% |
| All Indica | 779 | 68.04% | 31.96% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 364 | 64.29% | 35.71% |
| Indica II | 210 | 74.76% | 25.24% |
| Indica Intermediate | 205 | 67.80% | 32.20% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124565240 | C->A | LOC_Os11g41690(LOC_Os11g41690.1) | INTRON |