Detailed information of SNP:
|
SNP ID:
sf1124571660(Gbrowse)
Chromosome: chr11 Position: 24571660 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 89.56% | 10.44% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 494 | 78.54% | 21.46% |
| Aus | 59 | 76.27% | 23.73% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 332 | 71.99% | 28.01% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124571660 | T->C | INTERGENIC | None |