Detailed information of SNP:
|
SNP ID:
sf1124572598(Gbrowse)
Chromosome: chr11 Position: 24572598 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.30% | 23.70% |
| All Indica | 798 | 63.66% | 36.34% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 58.82% | 41.18% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124572598 | C->T | INTERGENIC | None |