Detailed information of SNP:
|
SNP ID:
sf1124572619(Gbrowse)
Chromosome: chr11 Position: 24572619 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 72.56% | 27.44% |
| All Indica | 799 | 70.96% | 29.04% |
| All Japonica | 493 | 73.23% | 26.77% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 331 | 65.86% | 34.14% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124572619 | G->A | INTERGENIC | None |