Detailed information of SNP:
|
SNP ID:
sf1124572719(Gbrowse)
Chromosome: chr11 Position: 24572719 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 70.12% | 29.88% |
| All Indica | 799 | 88.86% | 11.14% |
| All Japonica | 497 | 43.06% | 56.94% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 34.93% | 65.07% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124572719 | T->G | INTERGENIC | None |