Detailed information of SNP:



SNP ID: sf1124572719(Gbrowse)

Chromosome: chr11

Position: 24572719
Major allele: G

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1419 70.12% 29.88%
All Indica799 88.86% 11.14%
All Japonica497 43.06% 56.94%
Aus67 61.19% 38.81%
Indica I375 99.47% 0.53%
Indica II213 72.77% 27.23%
Indica Intermediate211 86.26% 13.74%
Temperate Japonica335 34.93% 65.07%
Tropical Japonica94 58.51% 41.49%
Japonica Intermediate68 61.76% 38.24%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1124572719 T->G INTERGENIC None