Detailed information of SNP:
|
SNP ID:
sf1124581135(Gbrowse)
Chromosome: chr11 Position: 24581135 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 70.98% | 29.02% |
| All Indica | 797 | 88.58% | 11.42% |
| All Japonica | 493 | 44.83% | 55.17% |
| Aus | 60 | 70.00% | 30.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 71.70% | 28.30% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 332 | 36.45% | 63.55% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 67 | 64.18% | 35.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124581135 | C->T | INTERGENIC | None |