Detailed information of SNP:
|
SNP ID:
sf1124582033(Gbrowse)
Chromosome: chr11 Position: 24582033 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.14% | 46.86% |
| All Indica | 799 | 83.10% | 16.90% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124582033 | T->C | INTERGENIC | None |