Detailed information of SNP:
|
SNP ID:
sf1124584264(Gbrowse)
Chromosome: chr11 Position: 24584264 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 68.37% | 31.63% |
| All Indica | 793 | 92.94% | 7.06% |
| All Japonica | 495 | 27.47% | 72.53% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 83.49% | 16.51% |
| Indica Intermediate | 206 | 90.29% | 9.71% |
| Temperate Japonica | 333 | 14.41% | 85.59% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124584264 | T->C | INTERGENIC | None |