Detailed information of SNP:
|
SNP ID:
sf1124597659(Gbrowse)
Chromosome: chr11 Position: 24597659 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.46% | 49.54% |
| All Indica | 796 | 21.36% | 78.64% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 372 | 7.80% | 92.20% |
| Indica II | 213 | 30.05% | 69.95% |
| Indica Intermediate | 211 | 36.49% | 63.51% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124597659 | G->A | LOC_Os11g41740(LOC_Os11g41740.1) | Non-Synonymous SNP |